<p>
Last modified by cap 6/25/2003

<p>
The entire 1/10th degree code  copied from
Ibrahim on atlas.  Note that the code was
changed to add reynolds, but I changed it back.

<p>
Files changed back:

<p>
&nbsp;&nbsp;&nbsp;&nbsp;
/home/work1/cpapadop/CALIF/source/Version_1/Calif_10/verification/myexp/code/EXF_CPPOPTIONS.h<br>
&nbsp;&nbsp;&nbsp;&nbsp;
/home/work1/cpapadop/CALIF/source/Version_1/Calif_10/verification/myexp/code/ECCO_CPPOPTIONS.h<br>

<p>
and 
	
<p>
&nbsp;&nbsp;&nbsp;&nbsp;
/home/work1/cpapadop/CALIF/source/Version_1/Calif_10/pkg/exf/exf_set_climsss.F<br>
&nbsp;&nbsp;&nbsp;&nbsp;
/home/work1/cpapadop/CALIF/source/Version_1/Calif_10/pkg/exf/exf_set_climsst.F<br>
	

<p>
Source code is located at:/home/work1/cpapadop/CALIF/source

<p>
To compile from source, need to go to:

<p>
&nbsp;&nbsp;&nbsp;&nbsp;
	/home/work1/cpapadop/CALIF/source/Version_1/Calif_10/bin<br>

<p>
	this directory should be made empty if want to start entirely
	from scratch:
<p>
	For compiling the first time or each time you change a file:
	make sure you are in tcsh for compiling.

<p>
&nbsp;&nbsp;&nbsp;&nbsp;
                ln -s ../verification/myexp/code/.genmakerc .<br>
&nbsp;&nbsp;&nbsp;&nbsp;
                ln -s ../verification/myexp/code/*.[Fh] .<br>
&nbsp;&nbsp;&nbsp;&nbsp;
                ../tools/genmake -platform=atlas -makefile<br>
&nbsp;&nbsp;&nbsp;&nbsp;
                make depend<br>
&nbsp;&nbsp;&nbsp;&nbsp;
                make<br>

<p>
        For other compiles:

<p>
&nbsp;&nbsp;&nbsp;&nbsp;
                make<br>

<p>
        This will compile the code and make put the mitgcmv executable
        in the exe directory.  The exe directory holds the data files
	that need to be modified to run.

<p>
        To run:

<p>
	You will need to copy your exe directory into where you want
	to run.
	
<p>
	Current path:

<p>
&nbsp;&nbsp;&nbsp;&nbsp;
		/home/work1/cpapadop/CALIF/Calif_10<br>

<p>
	I changed the path in:

<p>
	data, data.exf, data.exf_clim data.obcs for the correct forcing.
        Note that path names too long for the forcing files stops the
        data from being read and the code will not run.  This code was
        run as is on 6/23/2003 - 6/25/2003 For all of the runs I used
        the bash shell.

<p>
	Forcing paths are:

<p>
&nbsp;&nbsp;&nbsp;&nbsp;
	/home/work1/cpapadop/Forcing/Calif<br>

<p>
	I initially ran in the Initialization directory with a 0 start time,
        see
		
<p>
&nbsp;&nbsp;&nbsp;&nbsp;
		/home/work1/cpapadop/CALIF/Calif_10/Initialization<br>

<p>
	After this run has completed then need to copy the pickupfiles
	to the correct names to start the main run.  Use the script
	rename.x for this.  

<p>
	Create another directory for the main run, I used the one called
	Run.  Use the script runcode.sh to move through the years.  This will 
	use the data_calif and data.exf_calif files instead of data and
	data.exf.  These are located in the exe directory for this
	run, but the runcode.sh can be modified to use whatever directory
	that you want.

<p>
	Both Initialization directory and Run are just copies of the exe
        directory with the above modifications made.

<p>
	The scripts directory holds the matlab files needed to make global files
	and some animations.  The Ini.scripts and Run.scripts directories are
        what the Initialization and Run directories look like without all of
        the output files created by the runs.

<p>
	To check a run while running look at STDOUT.0000 or the other STD
        files to see how things are going.  These are also very useful for
        debugging when the code is not running well.